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Overview of $convert-data

  • Article

Note

Fast Healthcare Interoperability Resources (FHIR®) is an open healthcare specification.

By using the $convert-data operation in the FHIR service, you can convert health data from various formats to FHIR R4 data. The $convert-data operation uses Liquid templates from the FHIR Converter project for FHIR data conversion. You can customize these conversion templates as needed. Currently, the $convert-data operation supports four types of data conversion:

  • HL7v2 to FHIR R4
  • C-CDA to FHIR R4
  • JSON to FHIR R4 (intended for custom conversion mappings)
  • FHIR STU3 to FHIR R4

Note

You can use the $convert-data endpoint as a component within an ETL (extract, transform, and load) pipeline for the conversion of health data from various formats (for example: HL7v2, CCDA, JSON, and FHIR STU3) into the FHIR format. You can create an ETL pipeline for a complete workflow as you convert your health data. We recommend that you use an ETL engine that's based on Azure Logic Apps or Azure Data Factory. As an example, a workflow might include: data ingestion, performing $convert-data operations, validation, data pre/post processing, data enrichment, data deduplication, and loading the data for persistence in the FHIR service.

Use the $convert-data endpoint

The $convert-data operation is integrated into the FHIR service as a REST API action. You can call the $convert-data endpoint as follows:

POST {{fhirurl}}/$convert-data

The health data for conversion is delivered to the FHIR service in the body of the $convert-data request. If the request is successful, the FHIR service returns a FHIR bundle response with the data converted to FHIR R4.

Parameters

A $convert-data operation call packages the health data for conversion inside a JSON-formatted parameters in the body of the request. The parameters are described in the following table:

Parameter name Description           Accepted values
inputData Data payload to be converted to FHIR. For Hl7v2: string
For Ccda: XML
For Json: JSON
For FHIR STU3: JSON
inputDataType Type of data input. Hl7v2, Ccda, Json, Fhir
templateCollectionReference Reference to an OCI image template collection in Azure Container Registry. The reference is to an image that contains Liquid templates to use for conversion. It can refer either to default templates or to a custom template image that's registered within the FHIR service. The following sections cover customizing the templates, hosting them on Azure Container Registry, and registering to the FHIR service. For default/sample templates:
HL7v2 templates:
microsofthealth/fhirconverter:default
microsofthealth/hl7v2templates:default
C-CDA templates:
microsofthealth/ccdatemplates:default
JSON templates:
microsofthealth/jsontemplates:default
FHIR STU3 templates:
microsofthealth/stu3tor4templates:default

For custom templates:
<RegistryServer>/<imageName>@<imageDigest>, <RegistryServer>/<imageName>:<imageTag>
rootTemplate The root template to use while transforming the data. For HL7v2:
ADT_A01, ADT_A02, ADT_A03, ADT_A04, ADT_A05, ADT_A08, ADT_A11, ADT_A13, ADT_A14, ADT_A15, ADT_A16, ADT_A25, ADT_A26, ADT_A27, ADT_A28, ADT_A29, ADT_A31, ADT_A47, ADT_A60, OML_O21, ORU_R01, ORM_O01, VXU_V04, SIU_S12, SIU_S13, SIU_S14, SIU_S15, SIU_S16, SIU_S17, SIU_S26, MDM_T01, MDM_T02

For C-CDA:
CCD, ConsultationNote, DischargeSummary, HistoryandPhysical, OperativeNote, ProcedureNote, ProgressNote, ReferralNote, TransferSummary

For JSON:
ExamplePatient, Stu3ChargeItem

For FHIR STU3:
FHIR STU3 resource name (for example: Patient, Observation, Organization)

Note

FHIR STU3 to FHIR R4 templates are Liquid templates that provide mappings of field differences only between a FHIR STU3 resource and its equivalent resource in the FHIR R4 specification. Some of the FHIR STU3 resources are renamed or removed from FHIR R4. For more information about the resource differences and constraints for FHIR STU3 to FHIR R4 conversion, see Resource differences and constraints for FHIR STU3 to FHIR R4 conversion.

Note

JSON templates are sample templates for use in building your own conversion mappings. They are not default templates that adhere to any pre-defined health data message types. JSON itself is not specified as a health data format, unlike HL7v2 or C-CDA. Therefore, instead of providing default JSON templates, we provide some sample JSON templates that you can use as a starting point for your own customized mappings.

Warning

Default templates are released under the MIT License and are not supported by Microsoft Support.

The default templates are provided only to help you get started with your data conversion workflow. These default templates are not intended for production and might change when Microsoft releases updates for the FHIR service. To have consistent data conversion behavior across different versions of the FHIR service, you must do the following:

  1. Host your own copy of the templates in an Azure Container Registry instance.
  2. Register the templates to the FHIR service.
  3. Use your registered templates in your API calls.
  4. Verify that the conversion behavior meets your requirements.

For more information on hosting your own templates, see Host your own templates

Sample request

{
    "resourceType": "Parameters",
    "parameter": [
        {
            "name": "inputData",
            "valueString": "MSH|^~\\&|SIMHOSP|SFAC|RAPP|RFAC|20200508131015||ADT^A01|517|T|2.3|||AL||44|ASCII\nEVN|A01|20200508131015|||C005^Whittingham^Sylvia^^^Dr^^^DRNBR^D^^^ORGDR|\nPID|1|3735064194^^^SIMULATOR MRN^MRN|3735064194^^^SIMULATOR MRN^MRN~2021051528^^^NHSNBR^NHSNMBR||Kinmonth^Joanna^Chelsea^^Ms^^D||19870624000000|F|||89 Transaction House^Handmaiden Street^Wembley^^FV75 4GJ^GBR^HOME||020 3614 5541^PRN|||||||||C^White - Other^^^||||||||\nPD1|||FAMILY PRACTICE^^12345|\nPV1|1|I|OtherWard^MainRoom^Bed 183^Simulated Hospital^^BED^Main Building^4|28b|||C005^Whittingham^Sylvia^^^Dr^^^DRNBR^D^^^ORGDR|||CAR|||||||||16094728916771313876^^^^visitid||||||||||||||||||||||ARRIVED|||20200508131015||"
        },
        {
            "name": "inputDataType",
            "valueString": "Hl7v2"
        },
        {
            "name": "templateCollectionReference",
            "valueString": "microsofthealth/fhirconverter:default"
        },
        {
            "name": "rootTemplate",
            "valueString": "ADT_A01"
        }
    ]
}

Sample response

{
    "resourceType": "Bundle",
    "type": "batch",
    "entry": [
        {
            "fullUrl": "urn:uuid:9d697ec3-48c3-3e17-db6a-29a1765e22c6",
            "resource": {
                "resourceType": "Patient",
                "id": "9d697ec3-48c3-3e17-db6a-29a1765e22c6",
          ...
          ...
            },
            "request": {
                "method": "PUT",
                "url": "Location/50becdb5-ff56-56c6-40a1-6d554dca80f0"
            }
        }
    ]
}

The outcome of FHIR conversion is a FHIR bundle as a batch.

  • The FHIR bundle should align with the expectations of the FHIR R4 specification - Bundle - FHIR v4.0.1.
  • If you're trying to validate against a specific profile, you need to do some post processing by utilizing the FHIR $validate operation.

Next steps

In this article, you learned about the $convert-data operation and how to use the endpoint for converting health data to FHIR R4 by using the FHIR service in the Azure Health Data Service.

To learn how to configure settings for $convert-data using the Azure portal, see

Configure settings for $convert-data using the Azure portal

To learn how to troubleshoot $convert-data, see

Troubleshoot $convert-data

To learn about the frequently asked questions (FAQs) for $convert-data, see

Frequently asked questions about $convert-data

FHIR® is a registered trademark of Health Level Seven International, registered in the U.S. Trademark Office and is used with their permission.