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GitHub projects

We have many open-source projects on GitHub that provide you with the source code and instructions to deploy services for various uses. You're always welcome to visit our GitHub repositories to learn and experiment with our features and products.

Azure Health Data Services samples

Azure Health Data Services Toolkit

  • The Azure Health Data Services Toolkit helps you extend the functionality of Azure Health Data Services by providing a consistent toolset to build custom operations to modify the core service behavior.

FHIR server

Data Conversion & Anonymization

FHIR Converter

  • microsoft/FHIR-Converter: a data conversion project that uses CLI tool and $convert-data FHIR endpoint to translate healthcare legacy data formats into FHIR
  • Integrated with the FHIR service and FHIR server for Azure in the form of $convert-data operation
  • Ongoing improvements in OSS, and continual integration to the FHIR servers

FHIR Converter - VS Code Extension

FHIR Tools for Anonymization

  • microsoft/Tools-for-Health-Data-Anonymization: a data anonymization project that provides tools for de-identifying FHIR and DICOM data
  • Integrated with the FHIR service and FHIR server for Azure in the form of de-identified $export operation
  • For FHIR data, it can also be used with Azure Data Factory (ADF) pipeline by reading FHIR data from Azure blob storage and writing back the anonymized data

HealthKit and FHIR Integration

DICOM service

The DICOM service provides an open-source Medical Imaging Server for DICOM that is easily deployed on Azure. It allows standards-based communication with any DICOMweb™ enabled systems, and injects DICOM metadata into a FHIR server to create a holistic view of patient data. For more information, see Manage medical imaging data with the DICOM service.

Next steps

In this article, you learned about some of Azure Health Data Services open-source GitHub projects that provide source code and instructions to let you experiment and deploy services for various uses. For more information about Azure Health Data Services, see

(FHIR®) is a registered trademark of HL7 and is used with the permission of HL7.