I'm glad that you were able to resolve your issue and thank you for posting your solution so that others experiencing the same thing can easily reference this! Since the Microsoft Q&A community has a policy that "The question author cannot accept their own answer. They can only accept answers by others ", I'll repost your solution in case you'd like to "Accept " the answer.
Issue:
You have 2 multisite listeners configured with a wild a wildcard SSL certificate but when request for 2nd wildcard domain is received application gateway is serving the SSL certificate of 1st wildcard domain
Solution:
The issue faced here was due to request routing rule was set-up incorrectly and when you set-up the correct routing rules the issue was resolved.
If you have any other questions or are still running into more issues, please let me know. Thank you again for your time and patience throughout this issue.
Please remember to "Accept Answer" if any answer/reply helped, so that others in the community facing similar issues can easily find the solution.