@Somesh M. Gaikwad, Thanks for posting in Q&A. From your description, I know one user have files and software removed automatically twice. Please check if any script , Antivirus software or scheduled task deploy to this device may cause this. However, if there's no above existing, it is difficult to determine the exact cause. It is recommended to open case to look into the issue:
https://learn.microsoft.com/en-us/mem/get-support
Thanks for your understanding.
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