@용현 정 Thank you for reaching out to us, As I understand your ask is related to MDE installation on Linux devices which has CrowdStrike installed.
Have you tried installing MDE on Linux device manually - https://learn.microsoft.com/en-us/defender-endpoint/linux-install-manually ?
Also, as per this doc - https://learn.microsoft.com/en-us/defender-endpoint/microsoft-defender-endpoint-linux does the below mentioned approach can be tried?
Just check if agentless scanning - https://learn.microsoft.com/en-us/azure/defender-for-cloud/concept-agentless-data-collection helps to achieve your requirement, if not we need to have MDE installed on Linux in passive mode.