@Jon Resele, Thanks for posting in Q&A. For Microsoft Entra hybrid joined device, the enrollment method we can choose is GPO enrollment, co-management or Autopilot. For our scenario, the recommended one is GPO enrollment. For kiosk or shared device, the support enrollment methods are windows automatic enrollment, Autopilot or co-management. Here is a link with more details.
https://learn.microsoft.com/en-us/mem/intune/fundamentals/deployment-guide-enrollment-windows
For Enroll only in device management option. This option doesn't register the device in Microsoft Entra ID. From an Intune perspective, we don't recommend this MDM-only option for BYOD or personal devices. Also this is not for corporate device either. For your scenario, although the device has Microsoft Entra Hybrid joined device recorded, this record will not associate with the Intune records.
Meanwhile, for app deployment, some apps have requirements for example, win32 app needs the device enroll into Intune and also it needs to be Microsoft Entra registered, Microsoft Entra joined or Microsoft Entra hybrid joined. For Enroll only in device management option, it will not create Microsoft Entra device record to associate. So it may fail.
https://learn.microsoft.com/en-us/mem/intune/apps/apps-win32-app-management#prerequisites
For your scenario, please change another enrollment method instead of Enroll only in device management option for these devices.
Hope the above information can help.
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