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Hi Ryan,
I wanted to know if the 2013 version automatically backs up my project files, in case I make a mistake.
Project 2013 unlike some earlier versions, does not have an automatic backup option. There is an automatic save available in File > Options, Save but it is not a separate copy of the file.
If it doesn't do this automatically, I would like to know how I can set this up manually.
You don't note what operating system you are using, but Windows 7 has an automatic backup that you can schedule automatic backups - usually to another location - external drive. The alternative is manually performing a File > Save As and saving a copy of the file to another location.
Is there any form of version control and if there is, where can these versions be accessed?
No, not built in to Project. You can compare files that you have renamed through a Save As command using Compare Projects (Report tab).
I hope this helps.