Hi there,
The MAP tool has to be run by a domain administrator.
Also, there have to be (TCP/IP) ports open on the firewall of SQL Servers/instances behind a firewall, otherwise, the MAP tool will not find them.
On the 'Discovery Methods' page, choose 'Use Active Directory Domain Services (AD DS) AND 'Use Windows networking protocol' as 'methods to use to discovery computers'.
The below thread discusses the same issue and you can try out some troubleshooting steps from this and see if that helps you to sort the Issue.
MAP toolkit 9.5 not finding all SQL Server instances.
Hope this resolves your Query !!
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