How to use CalculatedContent templates with the MedTech service device mapping

Straipsnis
08/01/2023

This article provides an overview of how to use CalculatedContent templates within a MedTech service device mapping.

CalculatedContent template basics

The MedTech service CalculatedContent templates support two JSON expression languages: JSONPath and JMESPath. Expressions are used to identify which template to use with a given JSON device message (for example: TypeMatchExpression) and to extract specific values that are required to create a normalized message (for example: TimestampExpression, DeviceIdExpression, etc.).

Note

If you don't define an expression language, the MedTech service device mapping templates use the default expression language that's configured for the template. The default is JSONPath, but you can overwrite it if necessary.

An expression is defined as:

<name of expression> : {
   "value" : <the expression>,
   "language": <the expression language>
}

In the following example, typeMatchExpression is defined as:

"templateType": "CalculatedContent",
"template": {
   "typeName": "heartrate",
   "typeMatchExpression": {
      "value" : "$..[?(@heartRate)]",
      "language": "JsonPath"
   },
...
}

The CalculatedContent templates allow matching on and extracting values from a device message read from an Azure Event Hubs event hub through the following expressions:

Element	Description	JSONPath expression example	JMESPath expression example
typeMatchExpression	The expression that the MedTech service evaluates against the device message payload. If the service finds a matching token value, it considers the template a match. The service evaluates all later expressions against the extracted token value matched here.	`$..[?(@heartRate)]`	[Body][?contains(keys(@), `heartRate`)] \\| @[0]
deviceIdExpression	The expression to extract the device identifier.	`$.matchedToken.deviceId`	`@.matchedToken.deviceId`
timestampExpression	The expression to extract the timestamp value for the measurement's `OccurrenceTimeUtc` value.	`$.matchedToken.endDate`	`@.matchedToken.endDate`
patientIdExpression	The expression to extract the patient identifier. Required when the MedTech services's Resolution type is set to Create, and optional when the MedTech service's Resolution type is set to Lookup.	`$.matchedToken.patientId`	`@.matchedToken.patientId`
encounterIdExpression	Optional: The expression to extract the encounter identifier.	`$.matchedToken.encounterId`	`@.matchedToken.encounterId`
correlationIdExpression	Optional: The expression to extract the correlation identifier. You can use this output to group values into a single observation in the FHIR® destination mapping.	`$.matchedToken.correlationId`	`@.matchedToken.correlationId`
values[].valueExpression	The expression to extract the wanted value.	`$.matchedToken.heartRate`	`@.matchedToken.heartRate`

Note

The Resolution type specifies how the MedTech service associates device data with Device resources and Patient resources. The MedTech service reads Device and Patient resources from the FHIR service using device identifiers and patient identifiers. If an encounter identifier is specified and extracted from the device data payload, it's linked to the observation if an encounter exists on the FHIR service with that identifier. If the encounter identifier is successfully normalized, but no FHIR Encounter exists with that encounter identifier, a FhirResourceNotFound exception is thrown. For more information on configuring the MedTech service Resolution type, see Configure the Destination tab.

Expression languages

When you're specifying the language to use for the expression, the following values are valid:

Expression language	Value
JSONPath	`JsonPath`
JMESPath	`JmesPath`

Because JSONPath is the default expression language, it's not required to include the expression language within a CalculatedContent template.

"templateType": "CalculatedContent",
   "template": {
      "typeName": "heartrate",
      "typeMatchExpression": "$..[?(@heartRate)]",
...
}

You can also explicitly set the default expression language for a CalculatedContent template by using the defaultExpressionLanguage parameter:

"templateType": "CalculatedContent",
   "template": {
      "typeName": "heartrate",
      "defaultExpressionLanguage": "JmesPath",
      "typeMatchExpression": "[Body][?contains(keys(@), `heartRate`)] | @[0]",
...
}

Tip

For more information on JSONPath, see JSONPath - XPath for JSON. CalculatedContent templates use the JSON .NET implementation for resolving JSONPath expressions.

For more information on JMESPath, see JMESPath Specification. CalculatedContent templates use the JMESPath .NET implementation for resolving JMESPath expressions.

Custom functions

A set of custom functions for the MedTech service is also available. The MedTech service custom functions are outside the functions provided as part of the JMESPath specification. For more information on the MedTech service custom functions, see How to use custom functions with the MedTech service device mapping.

Example

When the MedTech service is processing a device message, the templates in the CollectionContent are used to evaluate the message. The typeMatchExpression is used to determine whether or not the template should be used to create a normalized message from the device message. If the typeMatchExpression evaluates to true, then the deviceIdExpression, timestampExpression, and valueExpression values are used to locate and extract the JSON values from the device message and create a normalized message. In this example, all expressions are written in JSONPath, however, it would be valid to write all the expressions in JMESPath. It's up to the template author to determine which expression language is most appropriate.

Tip

You can use the MedTech service Mapping debugger for assistance creating, updating, and troubleshooting the MedTech service device and FHIR destination mappings. The Mapping debugger enables you to easily view and make inline adjustments in real-time, without ever having to leave the Azure portal. The Mapping debugger can also be used for uploading test device messages to see how they'll look after being processed into normalized messages and transformed into FHIR Observations.

In this example, we're using a device message that is capturing heartRate data:

{
    "heartRate": "78",
    "endDate": "2023-03-13T22:46:01.8750000",
    "deviceId": "device01"
}

The event hub enriches the device message before the MedTech service reads the device message from the event hub:

{
    "Body": {
        "heartRate": "78",
        "endDate": "2023-03-13T22:46:01.8750000",
        "deviceId": "device01"
    }
}

We're using this device mapping for the normalization stage:

{
    "templateType": "CollectionContent",
    "template": [
        {
            "templateType": "CalculatedContent",
            "template": {
                "typeName": "heartrate",
                "typeMatchExpression": "$..[?(@heartRate)]",
                "deviceIdExpression": "$.matchedToken.deviceId",
                "timestampExpression": "$.matchedToken.endDate",
                "values": [
                    {
                        "required": true,
                        "valueExpression": "$.matchedToken.heartRate",
                        "valueName": "hr"
                    }
                ]
            }
        }
    ]
}

Important

The MedTech service evaluates typeMatchExpression against the incoming device data payload. If the service finds a matching token value, it considers the template a match.

The MedTech service evaluates all later expressions against a new token value. This new token value contains both the original device data payload and the extracted token value matched here.

In this way, the original device data payload and the matched object are available to each later expression. The extracted token value is available as the property matchedToken.

{
    "Body": {
        "heartRate": "78",
        "endDate": "2023-03-13T22:46:01.8750000",
        "deviceId": "device01"
    },
    "matchedToken": {
        "heartRate": "78",
        "endDate": "2023-03-13T22:46:01.8750000",
        "deviceId": "device01"
    }
}

The resulting normalized message will look like this after the normalization stage:

[
    {
        "type": "heartrate",
        "occurrenceTimeUtc": "2023-03-13T22:46:01.875Z",
        "deviceId": "device01",
        "properties": [
            {
                "name": "hr",
                "value": "78"
            }
        ]
    }
]

Tip

For assistance troubleshooting MedTech service deployment errors, see Troubleshoot MedTech service deployment errors.

For assistance troubleshooting MedTech service errors, see Troubleshoot errors using the MedTech service logs.

Next steps

How to use custom functions with the MedTech service device mapping

Overview of the FHIR destination mapping

Overview of the MedTech service scenario-based mappings samples

Note

FHIR® is a registered trademark of HL7 and is used with the permission of HL7.

Bendrinti naudojant

How to use CalculatedContent templates with the MedTech service device mapping

CalculatedContent template basics

Expression languages

Custom functions

Example

Next steps

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