Track Azure Synapse Analytics ML experiments with MLflow and Azure Machine Learning

In this article, learn how to enable MLflow to connect to Azure Machine Learning while working in an Azure Synapse Analytics workspace. You can leverage this configuration for tracking, model management and model deployment.

MLflow is an open-source library for managing the life cycle of your machine learning experiments. MLFlow Tracking is a component of MLflow that logs and tracks your training run metrics and model artifacts. Learn more about MLflow.

If you have an MLflow Project to train with Azure Machine Learning, see Train ML models with MLflow Projects and Azure Machine Learning (preview).

Prerequisites

• An Azure Synapse Analytics workspace and cluster.
• An Azure Machine Learning Workspace.

Install libraries

To install libraries on your dedicated cluster in Azure Synapse Analytics:

1. Create a requirements.txt file with the packages your experiments requires, but making sure it also includes the following packages:

   requirements.txt

   mlflow
   azureml-mlflow
   azure-ai-ml
   

2. Navigate to Azure Analytics Workspace portal.

3. Navigate to the Manage tab and select Apache Spark Pools.

4. Click the three dots next to the cluster name, and select Packages.

   

5. On the Requirements files section, click on Upload.

6. Upload the requirements.txt file.

7. Wait for your cluster to restart.

Track experiments with MLflow

Azure Synapse Analytics can be configured to track experiments using MLflow to Azure Machine Learning workspace. Azure Machine Learning provides a centralized repository to manage the entire lifecycle of experiments, models and deployments. It also has the advantage of enabling easier path to deployment using Azure Machine Learning deployment options.

Configuring your notebooks to use MLflow connected to Azure Machine Learning

To use Azure Machine Learning as your centralized repository for experiments, you can leverage MLflow. On each notebook where you are working on, you have to configure the tracking URI to point to the workspace you will be using. The following example shows how it can be done:

Configure tracking URI

1. Get the tracking URI for your workspace:

   Azure CLI

   APPLIES TO: Azure CLI ml extension v2 (current)

   1. Login and configure your workspace:

      az account set --subscription <subscription>
      az configure --defaults workspace=<workspace> group=<resource-group> location=<location> 
      

   2. You can get the tracking URI using the az ml workspace command:

      az ml workspace show --query mlflow_tracking_uri
      

   Python

   APPLIES TO: Python SDK azure-ai-ml v2 (current)

   You can get the Azure ML MLflow tracking URI using the Azure Machine Learning SDK v2 for Python. Ensure you have the library azure-ai-ml installed in the compute you are using. The following sample gets the unique MLFLow tracking URI associated with your workspace.

   1. Login into your workspace using the MLClient. The easier way to do that is by using the workspace config file:

      from azure.ai.ml import MLClient
      from azure.identity import DefaultAzureCredential
      
      ml_client = MLClient.from_config(credential=DefaultAzureCredential())
      

      Tip

      You can download the workspace configuration file by:

      1. Navigate to Azure ML studio
      2. Click on the upper-right corner of the page -> Download config file.
      3. Save the file config.json in the same directory where you are working on.

   2. Alternatively, you can use the subscription ID, resource group name and workspace name to get it:

      from azure.ai.ml import MLClient
      from azure.identity import DefaultAzureCredential
      
      #Enter details of your AzureML workspace
      subscription_id = '<SUBSCRIPTION_ID>'
      resource_group = '<RESOURCE_GROUP>'
      workspace_name = '<WORKSPACE_NAME>'
      
      ml_client = MLClient(credential=DefaultAzureCredential(),
                              subscription_id=subscription_id, 
                              resource_group_name=resource_group,
                              workspace_name=workspace_name)
      

      Important

      DefaultAzureCredential will try to pull the credentials from the available context. If you want to specify credentials in a different way, for instance using the web browser in an interactive way, you can use InteractiveBrowserCredential or any other method available in azure.identity package.

   3. Get the Azure Machine Learning Tracking URI:

      mlflow_tracking_uri = ml_client.workspaces.get(ml_client.workspace_name).mlflow_tracking_uri
      

   Studio

   Use the Azure Machine Learning portal to get the tracking URI:

   1. Open the Azure Machine Learning studio portal and log in using your credentials.

   2. In the upper right corner, click on the name of your workspace to show the Directory + Subscription + Workspace blade.

   3. Click on View all properties in Azure Portal.

   4. On the Essentials section, you will find the property MLflow tracking URI.

   Manually

   The Azure Machine Learning Tracking URI can be constructed using the subscription ID, region of where the resource is deployed, resource group name and workspace name. The following code sample shows how:

   Warning

   If you are working in a private link-enabled workspace, the MLflow endpoint will also use a private link to communicate with Azure Machine Learning. As a consequence, the tracking URI will look different as proposed here. You need to get the tracking URI using the Azure ML SDK or CLI v2 on those cases.

   region = "<LOCATION>"
   subscription_id = '<SUBSCRIPTION_ID>'
   resource_group = '<RESOURCE_GROUP>'
   workspace_name = '<AML_WORKSPACE_NAME>'
   
   mlflow_tracking_uri = f"azureml://{region}.api.azureml.ms/mlflow/v1.0/subscriptions/{subscription_id}/resourceGroups/{resource_group}/providers/Microsoft.MachineLearningServices/workspaces/{workspace_name}"
   

2. Configuring the tracking URI:

   Using MLflow SDK

   Then the method set_tracking_uri() points the MLflow tracking URI to that URI.

   import mlflow
   
   mlflow.set_tracking_uri(mlflow_tracking_uri)
   

   Using environment variables

   You can set the MLflow environment variables MLFLOW_TRACKING_URI in your compute to make any interaction with MLflow in that compute to point by default to Azure Machine Learning.

   MLFLOW_TRACKING_URI=$(az ml workspace show --query mlflow_tracking_uri | sed 's/"//g') 
   

   Tip

   When working on shared environments, like an Azure Databricks cluster, Azure Synapse Analytics cluster, or similar, it is useful to set the environment variable MLFLOW_TRACKING_URI at the cluster level to automatically configure the MLflow tracking URI to point to Azure Machine Learning for all the sessions running in the cluster rather than to do it on a per-session basis.

Configure authentication

Once the tracking is configured, you'll also need to configure how the authentication needs to happen to the associated workspace. By default, the Azure Machine Learning plugin for MLflow will perform interactive authentication by opening the default browser to prompt for credentials. Refer to Configure MLflow for Azure Machine Learning: Configure authentication to additional ways to configure authentication for MLflow in Azure Machine Learning workspaces.

For interactive jobs where there's a user connected to the session, you can rely on Interactive Authentication and hence no further action is required.

Warning

Interactive browser authentication blocks code execution when it prompts for credentials. This approach isn't suitable for authentication in unattended environments like training jobs. We recommend that you configure a different authentication mode.

For those scenarios where unattended execution is required, you have to configure a service principal to communicate with Azure Machine Learning.

MLflow SDK

import os

os.environ["AZURE_TENANT_ID"] = "<AZURE_TENANT_ID>"
os.environ["AZURE_CLIENT_ID"] = "<AZURE_CLIENT_ID>"
os.environ["AZURE_CLIENT_SECRET"] = "<AZURE_CLIENT_SECRET>"

Using environment variables

export AZURE_TENANT_ID="<AZURE_TENANT_ID>"
export AZURE_CLIENT_ID="<AZURE_CLIENT_ID>"
export AZURE_CLIENT_SECRET="<AZURE_CLIENT_SECRET>"

Tip

When working on shared environments, we recommend that you configure these environment variables at the compute. As a best practice, manage them as secrets in an instance of Azure Key Vault.

For instance, in Azure Databricks you can use secrets in environment variables as follows in the cluster configuration: AZURE_CLIENT_SECRET={{secrets/<scope-name>/<secret-name>}}. For more information about implementing this approach in Azure Databricks, see Reference a secret in an environment variable or refer to documentation for your platform.

Experiment's names in Azure Machine Learning

By default, Azure Machine Learning tracks runs in a default experiment called Default. It is usually a good idea to set the experiment you will be going to work on. Use the following syntax to set the experiment's name:

mlflow.set_experiment(experiment_name="experiment-name")

Tracking parameters, metrics and artifacts

You can use then MLflow in Azure Synapse Analytics in the same way as you're used to. For details see Log & view metrics and log files.

Registering models in the registry with MLflow

Models can be registered in Azure Machine Learning workspace, which offers a centralized repository to manage their lifecycle. The following example logs a model trained with Spark MLLib and also registers it in the registry.

mlflow.spark.log_model(model, 
                       artifact_path = "model", 
                       registered_model_name = "model_name")  

• If a registered model with the name doesn't exist, the method registers a new model, creates version 1, and returns a ModelVersion MLflow object.

• If a registered model with the name already exists, the method creates a new model version and returns the version object.

You can manage models registered in Azure Machine Learning using MLflow. View Manage models registries in Azure Machine Learning with MLflow for more details.

Deploying and consuming models registered in Azure Machine Learning

Models registered in Azure Machine Learning Service using MLflow can be consumed as:

• An Azure Machine Learning endpoint (real-time and batch): This deployment allows you to leverage Azure Machine Learning deployment capabilities for both real-time and batch inference in Azure Container Instances (ACI), Azure Kubernetes (AKS) or our Managed Endpoints.

• MLFlow model objects or Pandas UDFs, which can be used in Azure Synapse Analytics notebooks in streaming or batch pipelines.

Deploy models to Azure Machine Learning endpoints

You can leverage the azureml-mlflow plugin to deploy a model to your Azure Machine Learning workspace. Check How to deploy MLflow models page for a complete detail about how to deploy models to the different targets.

Important

Models need to be registered in Azure Machine Learning registry in order to deploy them. Deployment of unregistered models is not supported in Azure Machine Learning.

Deploy models for batch scoring using UDFs

You can choose Azure Synapse Analytics clusters for batch scoring. The MLFlow model is loaded and used as a Spark Pandas UDF to score new data.

from pyspark.sql.types import ArrayType, FloatType 

model_uri = "runs:/"+last_run_id+ {model_path} 

#Create a Spark UDF for the MLFlow model 
pyfunc_udf = mlflow.pyfunc.spark_udf(spark, model_uri) 

#Load Scoring Data into Spark Dataframe 
scoreDf = spark.table({table_name}).where({required_conditions}) 

#Make Prediction 
preds = (scoreDf 
           .withColumn('target_column_name', pyfunc_udf('Input_column1', 'Input_column2', ' Input_column3', …)) 
        ) 

display(preds) 

Clean up resources

If you wish to keep your Azure Synapse Analytics workspace, but no longer need the Azure Machine Learning workspace, you can delete the Azure Machine Learning workspace. If you don't plan to use the logged metrics and artifacts in your workspace, the ability to delete them individually is unavailable at this time. Instead, delete the resource group that contains the storage account and workspace, so you don't incur any charges:

1. In the Azure portal, select Resource groups on the far left.

   

2. From the list, select the resource group you created.

3. Select Delete resource group.

4. Enter the resource group name. Then select Delete.

Next steps

• Track experiment runs with MLflow and Azure Machine Learning.
• Deploy MLflow models in Azure Machine Learning.
• Manage your models with MLflow.