Microsoft Genomics documentation

Learn how Microsoft Genomics can power genome sequencing using a cloud implementation of the Burrows-Wheeler Aligner (BWA) and the Genome Analysis Toolkit (GATK) for secondary analysis.

Get started

Overview

• What is Microsoft Genomics?
• Common questions

Quickstart

• Run a sample workflow

How-To Guide

• Use FASTQ file inputs
• Use a BAM file input