Hi Mark Pearson,
I'm glad that you were able to resolve your issue and thank you for posting your solution so that others experiencing the same thing can easily reference this!
Since the Microsoft Q&A community has a policy that "The question author cannot accept their own answer. They can only accept answers by others ", I'll repost your solution in case you'd like to "Accept " the answer.
Issue:
Runtime error on Azure Web App
Solution:
This issue was caused by an Azure VM running as a domain controller. The Azure host the VM was running on had a disk error that triggered a live migration of the VM that had eventually cause the VM to be stuk in the above hung state.
An additional restart triggered another migration that fixed the issue. The Vm started as exoected and then the website became available again shortly afterwards.
Please click Accept Answer and kindly upvote it so that other people who faces similar issue may get benefitted from it.