Thank you for posting your question in the Microsoft Q&A forum.For this specific issue, I suggest you open a support ticket with our support team.
However, I will try to gather as much as information to help you.
Please correct me if my understanding is wrong.
Based on my research, the behavior you see is expected due to property promotion.
Property promotion is the process of extracting values of a document and writing those values to corresponding columns on the list or document library where the document is stored.
Document Property Promotion and Demotion | Microsoft Learn
cTag doesn’t always change is consistent with how Microsoft treats some changes as metadata level only or considers customXml modifications as "non-content" for cTag/eTag purposes.
Currently, you cannot disable property promotion in SharePoint Online.
Unfortunately, I was unable to find any documents to keep DOCX package bytes stable across upload/re-upload.
I am sorry that I cannot assist you further, you can create a support ticket via Admin Center.
I hope the information I provided will be helpful to you.
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